HL_8BR8_052

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGCAAUUUC

Length

9 nucleotides

Bulged bases

8BR8|1|Lt|U|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_052 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1737

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BR8|1|Lt|G|1780
8BR8|1|Lt|G|1781
8BR8|1|Lt|C|1782
8BR8|1|Lt|A|1783
8BR8|1|Lt|A|1784
8BR8|1|Lt|U|1785
8BR8|1|Lt|U|1786
8BR8|1|Lt|U|1787
8BR8|1|Lt|C|1788

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain St

Small subunit ribosomal RNA; SSU rRNA