HL_8BR8_079

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGUCGCGGC

Length

9 nucleotides

Bulged bases

8BR8|1|St|G|250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_079 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1459

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8BR8|1|St|G|243
8BR8|1|St|G|244
8BR8|1|St|U|245
8BR8|1|St|C|246
8BR8|1|St|G|247
8BR8|1|St|C|248
8BR8|1|St|G|249
8BR8|1|St|G|250
8BR8|1|St|C|251

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SM

Ribosomal protein S11