HL_8BR8_096

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCGGGCGCG

Length

9 nucleotides

Bulged bases

8BR8|1|St|G|987

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_096 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.4371

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BR8|1|St|C|981
8BR8|1|St|C|982
8BR8|1|St|G|983
8BR8|1|St|G|984
8BR8|1|St|G|985
8BR8|1|St|C|986
8BR8|1|St|G|987
8BR8|1|St|C|988
8BR8|1|St|G|989

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain Sh

Ribosomal protein S29A