HL_8BR8_098

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUCCAUUG

Length

8 nucleotides

Bulged bases

8BR8|1|St|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_098 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1903

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BR8|1|St|C|1051
8BR8|1|St|U|1052
8BR8|1|St|C|1053
8BR8|1|St|C|1054
8BR8|1|St|A|1055
8BR8|1|St|U|1056
8BR8|1|St|U|1057
8BR8|1|St|G|1058

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SU

Ribosomal protein S17