HL_8C00_007

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8C00|1|2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_007 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1036

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8C00|1|2|G|330
8C00|1|2|A|331
8C00|1|2|U|332
8C00|1|2|A|333
8C00|1|2|G|334
8C00|1|2|U|335
8C00|1|2|G|336
8C00|1|2|G|337
8C00|1|2|C|338

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A