HL_8C3A_127

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8C3A|1|AS|U|2276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_127 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0423

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8C3A|1|AS|U|2270
8C3A|1|AS|C|2271
8C3A|1|AS|U|2272
8C3A|1|AS|A|2273
8C3A|1|AS|A|2274
8C3A|1|AS|U|2275
8C3A|1|AS|U|2276
8C3A|1|AS|A|2277
8C3A|1|AS|G|2278

Current chains

Chain AS

25S

Nearby chains

Chain BQ

60S ribosomal protein L23-A

Chain CM

Small subunit ribosomal RNA; SSU rRNA