HL_8C93_017

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8C93|1|A|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_017 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.5731

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

8C93|1|A|U|566
8C93|1|A|U|567
8C93|1|A|U|568
8C93|1|A|U|569
8C93|1|A|G|570
8C93|1|A|U|571
8C93|1|A|A|572
8C93|1|A|U|573
8C93|1|A|A|574
8C93|1|A|A|575

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L21