HL_8C94_005

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2268

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8C94|1|A|U|158
8C94|1|A|G|159
8C94|1|A|A|160
8C94|1|A|A|161
8C94|1|A|U|162
8C94|1|A|C|163
8C94|1|A|C|164
8C94|1|A|A|165
8C94|1|A|U|166
8C94|1|A|A|167
8C94|1|A|G|168

Current chains

Chain A

23S rRNA

Nearby chains