3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
8C94|1|A|G|2751, 8C94|1|A|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C94_042 not in the Motif Atlas
Homologous match to HL_7RQB_066
Geometric discrepancy: 0.1699
The information below is about HL_7RQB_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.7
Basepair signature
cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
8

Unit IDs

8C94|1|A|C|2745
8C94|1|A|U|2746
8C94|1|A|G|2747
8C94|1|A|A|2748
8C94|1|A|A|2749
8C94|1|A|A|2750
8C94|1|A|G|2751
8C94|1|A|C|2752
8C94|1|A|A|2753
8C94|1|A|U|2754
8C94|1|A|C|2755
8C94|1|A|U|2756
8C94|1|A|A|2757
8C94|1|A|A|2758
8C94|1|A|G|2759

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0761 s