HL_8C94_042

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8C94|1|A|G|2751, 8C94|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_042 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1699

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8C94|1|A|C|2745
8C94|1|A|U|2746
8C94|1|A|G|2747
8C94|1|A|A|2748
8C94|1|A|A|2749
8C94|1|A|A|2750
8C94|1|A|G|2751
8C94|1|A|C|2752
8C94|1|A|A|2753
8C94|1|A|U|2754
8C94|1|A|C|2755
8C94|1|A|U|2756
8C94|1|A|A|2757
8C94|1|A|A|2758
8C94|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains