HL_8C9B_010

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

GGUGACAGCCC

Length

11 nucleotides

Bulged bases

8C9B|1|A|G|329, 8C9B|1|A|A|330, 8C9B|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9B_010 not in the Motif Atlas

Geometric match to HL_8VTW_008

Geometric discrepancy: 0.3646

The information below is about HL_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8C9B|1|A|G|326
8C9B|1|A|G|327
8C9B|1|A|U|328
8C9B|1|A|G|329
8C9B|1|A|A|330
8C9B|1|A|C|331
8C9B|1|A|A|332
8C9B|1|A|G|333
8C9B|1|A|C|334
8C9B|1|A|C|335
8C9B|1|A|C|336

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24