HL_8C9C_005

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9C_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2806

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8C9C|1|A|U|158
8C9C|1|A|G|159
8C9C|1|A|A|160
8C9C|1|A|A|161
8C9C|1|A|U|162
8C9C|1|A|C|163
8C9C|1|A|C|164
8C9C|1|A|A|165
8C9C|1|A|U|166
8C9C|1|A|A|167
8C9C|1|A|G|168

Current chains

Chain A

23S rRNA

Nearby chains