3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
ACACGUGGUAU
Length
11 nucleotides
Bulged bases
8CAM|1|a|G|386, 8CAM|1|a|G|389
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CAM_012 not in the Motif Atlas
Homologous match to HL_5J7L_145
Geometric discrepancy: 0.0452
The information below is about HL_5J7L_145
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91503.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8CAM|1|a|A|382
8CAM|1|a|C|383
8CAM|1|a|A|384
8CAM|1|a|C|385
8CAM|1|a|G|386
8CAM|1|a|U|387
8CAM|1|a|G|388
8CAM|1|a|G|389
8CAM|1|a|U|390
8CAM|1|a|A|391
8CAM|1|a|U|392

Current chains

Chain a
23S rRNA

Nearby chains

Chain w
Large ribosomal subunit protein bL28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.082 s