HL_8CIV_046

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

8CIV|1|AA|A|2138, 8CIV|1|AA|A|2139, 8CIV|1|AA|U|2140, 8CIV|1|AA|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0843

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8CIV|1|AA|U|2135
8CIV|1|AA|C|2136
8CIV|1|AA|U|2137
8CIV|1|AA|A|2138
8CIV|1|AA|A|2139
8CIV|1|AA|U|2140
8CIV|1|AA|U|2141
8CIV|1|AA|1MA|2142
8CIV|1|AA|A|2143
8CIV|1|AA|A|2144
8CIV|1|AA|A|2145

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain V

60S ribosomal protein L37-A