HL_8CIV_049

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUA(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1361

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CIV|1|AA|G|2253
8CIV|1|AA|U|2254
8CIV|1|AA|A|2255
8CIV|1|AA|A2M|2256
8CIV|1|AA|C|2257
8CIV|1|AA|U|2258
8CIV|1|AA|A|2259
8CIV|1|AA|U|2260
8CIV|1|AA|G|2261
8CIV|1|AA|A|2262
8CIV|1|AA|C|2263

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain Bb

Transfer RNA; tRNA

Chain c

Small subunit ribosomal RNA; SSU rRNA