HL_8CIV_106
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8CIV|1|c|G|1243, 8CIV|1|c|G|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CIV_106 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.4476
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8CIV|1|c|A|1238
8CIV|1|c|U|1239
8CIV|1|c|U|1240
8CIV|1|c|G|1241
8CIV|1|c|A|1242
8CIV|1|c|G|1243
8CIV|1|c|A|1244
8CIV|1|c|G|1245
8CIV|1|c|C|1246
8CIV|1|c|U|1247
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 8
- Ubiquitin-40S ribosomal protein S31
- Chain r
- 40S ribosomal protein S15
Coloring options: