HL_8CIV_117

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

8CIV|1|AA|U|879, 8CIV|1|AA|A|883, 8CIV|1|AA|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_117 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.085

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8CIV|1|AA|A2M|876
8CIV|1|AA|C|877
8CIV|1|AA|G|878
8CIV|1|AA|U|879
8CIV|1|AA|G|880
8CIV|1|AA|C|881
8CIV|1|AA|A|882
8CIV|1|AA|A|883
8CIV|1|AA|A|884
8CIV|1|AA|U|885

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain V

60S ribosomal protein L37-A