HL_8CKU_021

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8CKU|1|AA|A|913, 8CKU|1|AA|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0824

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CKU|1|AA|G|910
8CKU|1|AA|C|911
8CKU|1|AA|G|912
8CKU|1|AA|A|913
8CKU|1|AA|A|914
8CKU|1|AA|A|915
8CKU|1|AA|G|916
8CKU|1|AA|A|917
8CKU|1|AA|C|918

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain QQ

60S ribosomal protein L15-A

Chain V

60S ribosomal protein L37-A