HL_8CKU_041
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8CKU|1|AA|C|1846, 8CKU|1|AA|G|1848, 8CKU|1|AA|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_041 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.0882
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8CKU|1|AA|C|1844
8CKU|1|AA|G|1845
8CKU|1|AA|C|1846
8CKU|1|AA|A|1847
8CKU|1|AA|G|1848
8CKU|1|AA|C|1849
8CKU|1|AA|A|1850
8CKU|1|AA|G|1851
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
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