HL_8CKU_049
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GUA(A2M)CUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_049 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1365
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|AA|G|2253
8CKU|1|AA|U|2254
8CKU|1|AA|A|2255
8CKU|1|AA|A2M|2256
8CKU|1|AA|C|2257
8CKU|1|AA|U|2258
8CKU|1|AA|A|2259
8CKU|1|AA|U|2260
8CKU|1|AA|G|2261
8CKU|1|AA|A|2262
8CKU|1|AA|C|2263
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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