HL_8CKU_056
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- U(UR3)AAACG(A2M)UAACG
- Length
- 13 nucleotides
- Bulged bases
- 8CKU|1|AA|A|2637, 8CKU|1|AA|C|2644
- QA status
- Modified nucleotides: UR3, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CKU_056 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.0974
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8CKU|1|AA|U|2633
8CKU|1|AA|UR3|2634
8CKU|1|AA|A|2635
8CKU|1|AA|A|2636
8CKU|1|AA|A|2637
8CKU|1|AA|C|2638
8CKU|1|AA|G|2639
8CKU|1|AA|A2M|2640
8CKU|1|AA|U|2641
8CKU|1|AA|A|2642
8CKU|1|AA|A|2643
8CKU|1|AA|C|2644
8CKU|1|AA|G|2645
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L21-A
- Chain MM
- 60S ribosomal protein L10
- Chain N
- 60S ribosomal protein L29
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