HL_8CKU_118

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

8CKU|1|AA|U|879, 8CKU|1|AA|A|883, 8CKU|1|AA|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CKU_118 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0929

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8CKU|1|AA|A2M|876
8CKU|1|AA|C|877
8CKU|1|AA|G|878
8CKU|1|AA|U|879
8CKU|1|AA|G|880
8CKU|1|AA|C|881
8CKU|1|AA|A|882
8CKU|1|AA|A|883
8CKU|1|AA|A|884
8CKU|1|AA|U|885

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain V

60S ribosomal protein L37-A