HL_8CMJ_004

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8CMJ|1|AA|U|133, 8CMJ|1|AA|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_004 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.0881

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8CMJ|1|AA|C|132
8CMJ|1|AA|U|133
8CMJ|1|AA|U|134
8CMJ|1|AA|C|135
8CMJ|1|AA|G|136

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain QQ

60S ribosomal protein L15-A

Chain T

60S ribosomal protein L35-A

Chain V

60S ribosomal protein L37-A