HL_8CMJ_049

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUA(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1724

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CMJ|1|AA|G|2253
8CMJ|1|AA|U|2254
8CMJ|1|AA|A|2255
8CMJ|1|AA|A2M|2256
8CMJ|1|AA|C|2257
8CMJ|1|AA|U|2258
8CMJ|1|AA|A|2259
8CMJ|1|AA|U|2260
8CMJ|1|AA|G|2261
8CMJ|1|AA|A|2262
8CMJ|1|AA|C|2263

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain c

Small subunit ribosomal RNA; SSU rRNA