3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
GUA(A2M)CUAUGAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CMJ_049 not in the Motif Atlas
Homologous match to HL_8C3A_049
Geometric discrepancy: 0.1724
The information below is about HL_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CMJ|1|AA|G|2253
8CMJ|1|AA|U|2254
8CMJ|1|AA|A|2255
8CMJ|1|AA|A2M|2256
8CMJ|1|AA|C|2257
8CMJ|1|AA|U|2258
8CMJ|1|AA|A|2259
8CMJ|1|AA|U|2260
8CMJ|1|AA|G|2261
8CMJ|1|AA|A|2262
8CMJ|1|AA|C|2263

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain Aa
Elongation factor 2
Chain c
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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