HL_8CMJ_050
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 8CMJ|1|AA|U|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CMJ_050 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.1363
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8CMJ|1|AA|U|2292
8CMJ|1|AA|C|2293
8CMJ|1|AA|U|2294
8CMJ|1|AA|A|2295
8CMJ|1|AA|A|2296
8CMJ|1|AA|U|2297
8CMJ|1|AA|U|2298
8CMJ|1|AA|A|2299
8CMJ|1|AA|G|2300
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L23-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: