HL_8CMJ_063
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8CMJ|1|AA|G|2898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CMJ_063 not in the Motif Atlas
- Homologous match to HL_8C3A_063
- Geometric discrepancy: 0.148
- The information below is about HL_8C3A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_79150.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8CMJ|1|AA|A|2897
8CMJ|1|AA|G|2898
8CMJ|1|AA|C|2899
8CMJ|1|AA|A|2900
8CMJ|1|AA|G|2901
8CMJ|1|AA|A|2902
8CMJ|1|AA|A|2903
8CMJ|1|AA|U|2904
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Aa
- Elongation factor 2
- Chain LL
- RPL9A isoform 1
- Chain Y
- Ubiquitin-60S ribosomal protein L40
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