HL_8CMJ_084

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8CMJ|1|c|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_084 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1711

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8CMJ|1|c|G|330
8CMJ|1|c|A|331
8CMJ|1|c|U|332
8CMJ|1|c|A|333
8CMJ|1|c|G|334
8CMJ|1|c|U|335
8CMJ|1|c|G|336
8CMJ|1|c|G|337
8CMJ|1|c|C|338

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A