HL_8CMJ_092

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8CMJ|1|c|A|780, 8CMJ|1|c|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_092 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3813

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8CMJ|1|c|C|777
8CMJ|1|c|G|778
8CMJ|1|c|U|779
8CMJ|1|c|A|780
8CMJ|1|c|U|781
8CMJ|1|c|U|782
8CMJ|1|c|G|783

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain m

40S ribosomal protein S9-A