HL_8CMJ_101
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8CMJ|1|c|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CMJ_101 not in the Motif Atlas
- Homologous match to HL_8C3A_218
- Geometric discrepancy: 0.3711
- The information below is about HL_8C3A_218
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_81538.1
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8CMJ|1|c|A|1238
8CMJ|1|c|U|1239
8CMJ|1|c|U|1240
8CMJ|1|c|G|1241
8CMJ|1|c|A|1242
8CMJ|1|c|G|1243
8CMJ|1|c|A|1244
8CMJ|1|c|G|1245
8CMJ|1|c|C|1246
8CMJ|1|c|U|1247
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 8
- Ubiquitin-40S ribosomal protein S31
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain r
- 40S ribosomal protein S15
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