3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
8CMJ|1|c|U|1314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CMJ_103 not in the Motif Atlas
Homologous match to HL_4V88_215
Geometric discrepancy: 0.1905
The information below is about HL_4V88_215
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8CMJ|1|c|C|1309
8CMJ|1|c|U|1310
8CMJ|1|c|U|1311
8CMJ|1|c|A|1312
8CMJ|1|c|A|1313
8CMJ|1|c|U|1314
8CMJ|1|c|U|1315
8CMJ|1|c|G|1316

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain t
40S ribosomal protein S17-A

Coloring options:


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