HL_8CMJ_112

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

8CMJ|1|AA|U|879, 8CMJ|1|AA|A|883, 8CMJ|1|AA|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CMJ_112 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0971

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8CMJ|1|AA|A2M|876
8CMJ|1|AA|C|877
8CMJ|1|AA|G|878
8CMJ|1|AA|U|879
8CMJ|1|AA|G|880
8CMJ|1|AA|C|881
8CMJ|1|AA|A|882
8CMJ|1|AA|A|883
8CMJ|1|AA|A|884
8CMJ|1|AA|U|885

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain V

60S ribosomal protein L37-A