HL_8CMJ_123
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- GAUCAGAUAC(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 8CMJ|1|c|U|1004
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CMJ_123 not in the Motif Atlas
- Homologous match to HL_8P9A_211
- Geometric discrepancy: 0.3221
- The information below is about HL_8P9A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8CMJ|1|c|G|997
8CMJ|1|c|A|998
8CMJ|1|c|U|999
8CMJ|1|c|C|1000
8CMJ|1|c|A|1001
8CMJ|1|c|G|1002
8CMJ|1|c|A|1003
8CMJ|1|c|U|1004
8CMJ|1|c|A|1005
8CMJ|1|c|C|1006
8CMJ|1|c|OMC|1007
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain q
- 40S ribosomal protein S14-A
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