HL_8CVM_017

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

ACUCGUGGAAU

Length

11 nucleotides

Bulged bases

8CVM|1|a|G|475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_017 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2126

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CVM|1|a|A|471
8CVM|1|a|C|472
8CVM|1|a|U|473
8CVM|1|a|C|474
8CVM|1|a|G|475
8CVM|1|a|U|476
8CVM|1|a|G|477
8CVM|1|a|G|478
8CVM|1|a|A|479
8CVM|1|a|A|480
8CVM|1|a|U|481

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L28