HL_8CVM_046

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAGUAU

Length

7 nucleotides

Bulged bases

8CVM|1|a|U|1818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_046 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0896

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8CVM|1|a|A|1814
8CVM|1|a|G|1815
8CVM|1|a|A|1816
8CVM|1|a|G|1817
8CVM|1|a|U|1818
8CVM|1|a|A|1819
8CVM|1|a|U|1820

Current chains

Chain a

23S ribosomal RNA

Nearby chains