HL_8CVM_050
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8CVM|1|a|A|1963, 8CVM|1|a|C|1964, 8CVM|1|a|C|1965, 8CVM|1|a|A|1969
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVM_050 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0641
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8CVM|1|a|U|1960
8CVM|1|a|U|1961
8CVM|1|a|U|1962
8CVM|1|a|A|1963
8CVM|1|a|C|1964
8CVM|1|a|C|1965
8CVM|1|a|A|1966
8CVM|1|a|A|1967
8CVM|1|a|A|1968
8CVM|1|a|A|1969
8CVM|1|a|A|1970
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
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