HL_8CVO_004

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8CVO|1|A|G|1079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVO_004 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0885

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8CVO|1|A|G|1074
8CVO|1|A|U|1075
8CVO|1|A|U|1076
8CVO|1|A|A|1077
8CVO|1|A|A|1078
8CVO|1|A|G|1079
8CVO|1|A|U|1080
8CVO|1|A|C|1081

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S7