HL_8ETI_020

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ETI_020 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2663

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8ETI|1|1|U|1298
8ETI|1|1|G|1299
8ETI|1|1|U|1300
8ETI|1|1|A|1301
8ETI|1|1|A|1302
8ETI|1|1|C|1303
8ETI|1|1|A|1304
8ETI|1|1|A|1305

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain W

Ribosome assembly factor mrt4

Chain b

Probable nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein nsa2