HL_8EVP_097

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

8EVP|1|B5|U|832, 8EVP|1|B5|G|833, 8EVP|1|B5|U|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_097 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5321

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVP|1|B5|U|827
8EVP|1|B5|A|828
8EVP|1|B5|U|829
8EVP|1|B5|U|830
8EVP|1|B5|U|831
8EVP|1|B5|U|832
8EVP|1|B5|G|833
8EVP|1|B5|U|834
8EVP|1|B5|U|835
8EVP|1|B5|G|836
8EVP|1|B5|G|837
8EVP|1|B5|U|838
8EVP|1|B5|U|839
8EVP|1|B5|U|840
8EVP|1|B5|C|841
8EVP|1|B5|U|842
8EVP|1|B5|A|843

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A