HL_8EVP_107

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8EVP|1|B5|U|1922

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_107 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.093

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8EVP|1|B5|C|1917
8EVP|1|B5|U|1918
8EVP|1|B5|U|1919
8EVP|1|B5|A|1920
8EVP|1|B5|A|1921
8EVP|1|B5|U|1922
8EVP|1|B5|U|1923
8EVP|1|B5|G|1924

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A