HL_8FL9_057

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8FL9|1|L3|A|4214, 8FL9|1|L3|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL9_057 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1351

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8FL9|1|L3|U|4210
8FL9|1|L3|C|4211
8FL9|1|L3|A|4212
8FL9|1|L3|A|4213
8FL9|1|L3|A|4214
8FL9|1|L3|C|4215
8FL9|1|L3|G|4216
8FL9|1|L3|G|4217
8FL9|1|L3|U|4218
8FL9|1|L3|A|4219
8FL9|1|L3|6MZ|4220
8FL9|1|L3|C|4221
8FL9|1|L3|G|4222

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21