HL_8FL9_078
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8FL9|1|L3|A|3642, 8FL9|1|L3|A|3643, 8FL9|1|L3|U|3644, 8FL9|1|L3|A|3648
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FL9_078 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.2051
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8FL9|1|L3|PSU|3639
8FL9|1|L3|U|3640
8FL9|1|L3|U|3641
8FL9|1|L3|A|3642
8FL9|1|L3|A|3643
8FL9|1|L3|U|3644
8FL9|1|L3|U|3645
8FL9|1|L3|A|3646
8FL9|1|L3|A|3647
8FL9|1|L3|A|3648
8FL9|1|L3|A|3649
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LW
- 60S ribosomal protein L37
- Chain SF
- 60S ribosomal protein L8
- Chain SR
- GTP-binding protein 4
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