HL_8FRU_019

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

ACGCGCAGAU

Length

10 nucleotides

Bulged bases

8FRU|1|1|C|594, 8FRU|1|1|G|598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_019 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1175

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8FRU|1|1|A|591
8FRU|1|1|C|592
8FRU|1|1|G|593
8FRU|1|1|C|594
8FRU|1|1|G|595
8FRU|1|1|C|596
8FRU|1|1|A|597
8FRU|1|1|G|598
8FRU|1|1|A|599
8FRU|1|1|U|600

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain P

60S ribosomal protein uL22

Chain j

60S ribosomal protein eL37