HL_8FRU_022

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGGCCUG

Length

8 nucleotides

Bulged bases

8FRU|1|1|C|791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_022 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.2342

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8FRU|1|1|C|786
8FRU|1|1|U|787
8FRU|1|1|G|788
8FRU|1|1|G|789
8FRU|1|1|C|790
8FRU|1|1|C|791
8FRU|1|1|U|792
8FRU|1|1|G|793

Current chains

Chain 1

28S rRNA

Nearby chains

Chain D

60S ribosomal protein uL18

Chain T

60S ribosomal protein eL21

Chain b

60S ribosomal protein eL29