HL_8FRU_042
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UUUACUAGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8FRU|1|1|A|1625, 8FRU|1|1|C|1626, 8FRU|1|1|U|1627, 8FRU|1|1|A|1631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FRU_042 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1694
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8FRU|1|1|U|1622
8FRU|1|1|U|1623
8FRU|1|1|U|1624
8FRU|1|1|A|1625
8FRU|1|1|C|1626
8FRU|1|1|U|1627
8FRU|1|1|A|1628
8FRU|1|1|G|1629
8FRU|1|1|A|1630
8FRU|1|1|A|1631
8FRU|1|1|A|1632
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain j
- 60S ribosomal protein eL37
Coloring options: