HL_8FRU_046

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGCAAUUUC

Length

9 nucleotides

Bulged bases

8FRU|1|1|U|1784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_046 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1675

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8FRU|1|1|G|1778
8FRU|1|1|G|1779
8FRU|1|1|C|1780
8FRU|1|1|A|1781
8FRU|1|1|A|1782
8FRU|1|1|U|1783
8FRU|1|1|U|1784
8FRU|1|1|U|1785
8FRU|1|1|C|1786

Current chains

Chain 1

28S rRNA

Nearby chains

Chain V

60S ribosomal protein uL14