HL_8FRU_048

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGGCCGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FRU_048 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.246

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8FRU|1|1|G|1930
8FRU|1|1|G|1980
8FRU|1|1|G|1981
8FRU|1|1|C|1982
8FRU|1|1|C|1983
8FRU|1|1|G|1984
8FRU|1|1|C|1985

Current chains

Chain 1

28S rRNA

Nearby chains

Chain i

60S ribosomal protein eL36