HL_8G31_088

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8G31|1|v|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G31_088 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1365

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8G31|1|v|G|786
8G31|1|v|A|787
8G31|1|v|U|788
8G31|1|v|U|789
8G31|1|v|A|790
8G31|1|v|G|791
8G31|1|v|A|792
8G31|1|v|U|793
8G31|1|v|A|794
8G31|1|v|C|795
8G31|1|v|C|796

Current chains

Chain v

16S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain j

30S ribosomal protein S11

Chain t

30S ribosomal protein S21 (Fragment)