HL_8G61_026

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8G61|1|L5|U|1596, 8G61|1|L5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_026 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0979

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8G61|1|L5|A|1593
8G61|1|L5|C|1594
8G61|1|L5|G|1595
8G61|1|L5|U|1596
8G61|1|L5|G|1597
8G61|1|L5|C|1598
8G61|1|L5|A|1599
8G61|1|L5|A|1600
8G61|1|L5|A|1601
8G61|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37