HL_8G61_048

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8G61|1|L5|C|2794, 8G61|1|L5|G|2796, 8G61|1|L5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_048 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1186

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8G61|1|L5|C|2792
8G61|1|L5|G|2793
8G61|1|L5|C|2794
8G61|1|L5|A|2795
8G61|1|L5|G|2796
8G61|1|L5|C|2797
8G61|1|L5|A|2798
8G61|1|L5|G|2799

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39