HL_8G61_057

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8G61|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_057 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0672

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8G61|1|L5|U|3796
8G61|1|L5|C|3797
8G61|1|L5|U|3798
8G61|1|L5|A|3799
8G61|1|L5|A|3800
8G61|1|L5|U|3801
8G61|1|L5|U|3802
8G61|1|L5|A|3803
8G61|1|L5|G|3804

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA