HL_8HFR_020
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8HFR|1|1e|U|879, 8HFR|1|1e|A|883, 8HFR|1|1e|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HFR_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.1562
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8HFR|1|1e|A|876
8HFR|1|1e|C|877
8HFR|1|1e|G|878
8HFR|1|1e|U|879
8HFR|1|1e|G|880
8HFR|1|1e|C|881
8HFR|1|1e|A|882
8HFR|1|1e|A|883
8HFR|1|1e|A|884
8HFR|1|1e|U|885
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain Pv
- 60S ribosomal protein L17-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain rA
- Nucleolar GTP-binding protein 1
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